| Round | Overall | Player |
|---|---|---|
| 1 | 4th | C Mike Piazza NYN |
| 2 | 21st | 3B Albert Pujols StL |
| 3 | 28th | 1B Rafael Palmeiro Tex |
| 4 | 45th | 2B Bret Boone Sea |
| 5 | 52nd | RP Billy Wagner Hou |
| 6 | 69th | RP Billy Koch Oak |
| 7 | 76th | OF Bernie Williams NYA |
| 8 | 93rd | SP Tom Glavine Atl |
| 9 | 100th | SP Chan Ho Park Tex |
| 10 | 117th | DH Edgar Martinez Sea |
| 11 | 124th | SS Juan Uribe Col |
| 12 | 141st | OF Darin Erstad Ana |
| 13 | 148th | OF Shannon Stewart Tor |
| 14 | 165th | SP Robert Person Phi |
| 15 | 172nd | SP Todd Ritchie ChA |
| 16 | 189th | OF Reggie Sanders SF |
| 17 | 196th | SP Jason Schmidt SF |
| 18 | 213th | SP Rick Helling Ari |
| 19 | 220th | 3B Robin Ventura NYA |
| 20 | 237th | SP Scott Erickson Bal |
| 21 | 244th | DH Ellis Burks Cle |
| 22 | 261st | 2B Fernando Vina StL |
| 23 | 268th | OF Corey Patterson ChN |
| 24 | 285th | 1B Mark Grace Ari |
| 25 | 292nd | C Darrin Fletcher Tor |
| 26 | 309th | RP Tom Gordon ChN |
| 27 | 316th | SS Angel Berroa KC |
| 28 | 333rd | SP Kenny Rogers Tex |
| 29 | 340th | SS Jack Wilson Pit |