| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 1B Jason Giambi NYA |
| 2 | 18th | OF Manny Ramirez Bos |
| 3 | 31st | SP Tim Hudson Oak |
| 4 | 42nd | OF Juan Gonzalez Tex |
| 5 | 55th | SP Roy Oswalt Hou |
| 6 | 66th | 1B Mike Sweeney KC |
| 7 | 79th | SP Kerry Wood ChN |
| 8 | 90th | 3B Adrian Beltre LA |
| 9 | 103rd | 2B Jose Ortiz Col |
| 10 | 114th | RP Byung-Hyun Kim Ari |
| 11 | 127th | SP Andy Pettitte NYA |
| 12 | 138th | OF Trot Nixon Bos |
| 13 | 151st | DH Nick Johnson NYA |
| 14 | 162nd | SP Shawn Estes NYN |
| 15 | 175th | SS Edgar Renteria StL |
| 16 | 186th | SP Mark Prior ChN |
| 17 | 199th | SP Jason Marquis Atl |
| 18 | 210th | 3B Vinny Castilla Atl |
| 19 | 223rd | C Wiklenman Gonzalez SD |
| 20 | 234th | OF Gabe Kapler Tex |
| 21 | 247th | SP Carlos Hernandez Hou |
| 22 | 258th | SP Dustin Hermanson Bos |
| 23 | 271st | OF Jeremy Giambi Oak |
| 24 | 282nd | 2B Mike Young Tex |
| 25 | 295th | SP Albie Lopez Atl |
| 26 | 306th | C Einar Diaz Cle |
| 27 | 319th | 1B Lee Stevens Mon |
| 28 | 330th | SS Cesar Izturis LA |
| 29 | 343rd | SP Jeff D'Amico NYN |