| Round | Overall | Player |
|---|---|---|
| 1 | 11th | SS Nomar Garciaparra Bos |
| 2 | 14th | 3B Troy Glaus Ana |
| 3 | 35th | SP Curt Schilling Ari |
| 4 | 38th | SP Freddy Garcia Sea |
| 5 | 59th | OF Andruw Jones Atl |
| 6 | 62nd | 2B Jose Vidro Mon |
| 7 | 83rd | SP Roger Clemens NYA |
| 8 | 86th | 1B Paul Konerko ChA |
| 9 | 107th | 1B Sean Casey Cin |
| 10 | 110th | OF Mike Cameron Sea |
| 11 | 131st | OF Geoff Jenkins Mil |
| 12 | 134th | SP Jeff Weaver Det |
| 13 | 155th | C Ben Petrick Col |
| 14 | 158th | SP Kazuhisa Ishii LA |
| 15 | 179th | OF Carlos Lee ChA |
| 16 | 182nd | 1B Tony Clark Bos |
| 17 | 203rd | SP Roy Halladay Tor |
| 18 | 206th | 3B Aaron Boone Cin |
| 19 | 227th | SP John Burkett Bos |
| 20 | 230th | SP Derek Lowe Bos |
| 21 | 251st | SP Danys Baez Cle |
| 22 | 254th | SP Jason Johnson Bal |
| 23 | 275th | SS Mike Bordick Bal |
| 24 | 278th | OF Mark Kotsay SD |
| 25 | 299th | 2B Ron Belliard Mil |
| 26 | 302nd | C Ben Molina Ana |
| 27 | 323rd | SP Kip Wells Pit |
| 28 | 326th | SP Ruben Quevedo Mil |
| 29 | 347th | SP Kevin Jarvis SD |