| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | OF Barry Bonds SF |
| 2 | 22nd | SP Greg Maddux Atl |
| 3 | 27th | RP Mariano Rivera NYA |
| 4 | 46th | C Jorge Posada NYA |
| 5 | 51st | 2B Ray Durham ChA |
| 6 | 70th | 3B Edgardo Alfonzo NYN |
| 7 | 75th | 1B Frank Thomas ChA |
| 8 | 94th | SS Cristian Guzman Min |
| 9 | 99th | SP Al Leiter NYN |
| 10 | 118th | RP Danny Graves Cin |
| 11 | 123rd | OF Jeromy Burnitz NYN |
| 12 | 142nd | SP Cory Lidle Oak |
| 13 | 147th | OF Jermaine Dye Oak |
| 14 | 166th | C Jason Varitek Bos |
| 15 | 171st | OF Carl Everett Tex |
| 16 | 190th | OF Tim Salmon Ana |
| 17 | 195th | SS Barry Larkin Cin |
| 18 | 214th | 3B Tony Batista Bal |
| 19 | 219th | 1B Doug Mientkiewicz Min |
| 20 | 238th | SP Paul Abbott Sea |
| 21 | 243rd | SP Steve Trachsel NYN |
| 22 | 262nd | 2B Mark Grudzielanek LA |
| 23 | 267th | SS Tony Womack Ari |
| 24 | 286th | SP Kirk Rueter SF |
| 25 | 291st | OF Roger Cedeno NYN |
| 26 | 310th | 3B Fernando Tatis Mon |
| 27 | 315th | RP John Rocker Tex |
| 28 | 334th | SP Garrett Stephenson StL |
| 29 | 339th | SP Tanyon Sturtze TB |