| Round | Overall | Player |
|---|---|---|
| 1 | 6th | SP Randy Johnson Ari |
| 2 | 19th | SP Pedro Martinez Bos |
| 3 | 30th | SS Miguel Tejada Oak |
| 4 | 43rd | OF Gary Sheffield Atl |
| 5 | 54th | RP Kazuhiro Sasaki Sea |
| 6 | 67th | 1B Jim Thome Cle |
| 7 | 78th | OF Pat Burrell Phi |
| 8 | 91st | RP Jose Mesa Phi |
| 9 | 102nd | OF Johnny Damon Bos |
| 10 | 115th | RP Matt Anderson Det |
| 11 | 126th | 3B Sean Burroughs SD |
| 12 | 139th | SP David Wells NYA |
| 13 | 150th | SP Aaron Sele Ana |
| 14 | 163rd | SP Bud Smith StL |
| 15 | 174th | 1B John Olerud Sea |
| 16 | 187th | 2B Luis Castillo Fla |
| 17 | 198th | SP Juan Cruz ChN |
| 18 | 211th | OF Russ Branyan Cle |
| 19 | 222nd | C Todd Hundley ChN |
| 20 | 235th | 3B Eric Hinske Tor |
| 21 | 246th | DH David Ortiz Min |
| 22 | 259th | C Raul Casanova Mil |
| 23 | 270th | SS Julio Lugo Hou |
| 24 | 283rd | OF Kevin Millar Fla |
| 25 | 294th | RP Braden Looper Fla |
| 26 | 307th | C Mike Rivera Det |
| 27 | 318th | SP Julian Tavarez Fla |
| 28 | 331st | SS David Eckstein Ana |
| 29 | 342nd | 2B Adam Kennedy Ana |