| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Vladimir Guerrero Mon |
| 2 | 13th | OF Luis Gonzalez Ari |
| 3 | 36th | OF Ken Griffey Jr Cin |
| 4 | 37th | SP Matt Morris StL |
| 5 | 60th | RP Armando Benitez NYN |
| 6 | 61st | C Jason Kendall Pit |
| 7 | 84th | RP John Smoltz Atl |
| 8 | 85th | SP Wade Miller Hou |
| 9 | 108th | SS Orlando Cabrera Mon |
| 10 | 109th | 3B Corey Koskie Min |
| 11 | 132nd | SP Ben Sheets Mil |
| 12 | 133rd | OF Raul Mondesi Tor |
| 13 | 156th | SP C.C. Sabathia Cle |
| 14 | 157th | SP Woody Williams StL |
| 15 | 180th | SP Tony Armas Jr. Mon |
| 16 | 181st | 1B Tino Martinez StL |
| 17 | 204th | 2B Marcus Giles Atl |
| 18 | 205th | SP Steve Sparks Det |
| 19 | 228th | SP Shane Reynolds Hou |
| 20 | 229th | C Ben Davis Sea |
| 21 | 252nd | OF Greg Vaughn TB |
| 22 | 253rd | RP Esteban Yan TB |
| 23 | 276th | 1B David Segui Bal |
| 24 | 277th | SS Royce Clayton ChA |
| 25 | 300th | 3B Dean Palmer Det |
| 26 | 301st | RP Jose Jimenez Col |
| 27 | 324th | 2B Randy Velarde Oak |
| 28 | 325th | OF Rusty Greer Tex |
| 29 | 348th | 2B Jay Bell Ari |