| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Sammy Sosa ChN |
| 2 | 21st | 3B Albert Pujols StL |
| 3 | 28th | 1B Carlos Delgado Tor |
| 4 | 45th | SP Mark Mulder Oak |
| 5 | 52nd | 1B Frank Thomas ChA |
| 6 | 69th | C Paul Lo Duca LA |
| 7 | 76th | RP Armando Benitez NYN |
| 8 | 93rd | OF Bernie Williams NYA |
| 9 | 100th | SP Josh Beckett Fla |
| 10 | 117th | SS Cristian Guzman Min |
| 11 | 124th | 2B Jose Ortiz Col |
| 12 | 141st | SP Ben Sheets Mil |
| 13 | 148th | SP David Wells NYA |
| 14 | 165th | OF Trot Nixon Bos |
| 15 | 172nd | SP Mike Hampton Col |
| 16 | 189th | SP Shawn Estes NYN |
| 17 | 196th | SP Rick Reed Min |
| 18 | 213th | SP Shane Reynolds Hou |
| 19 | 220th | RP Roberto Hernandez KC |
| 20 | 237th | 2B Todd Walker Cin |
| 21 | 244th | SS Alex Gonzalez ChN |
| 22 | 261st | SP Mark Prior ChN |
| 23 | 268th | DH Nick Johnson NYA |
| 24 | 285th | 3B Fernando Tatis Mon |
| 25 | 292nd | SP Kris Benson Pit |
| 26 | 309th | OF Bubba Trammell SD |
| 27 | 316th | 1B Kevin Young Pit |
| 28 | 333rd | C Michael Barrett Mon |
| 29 | 340th | RP Braden Looper Fla |