| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Barry Bonds SF |
| 2 | 15th | 3B Troy Glaus Ana |
| 3 | 34th | SS Rich Aurilia SF |
| 4 | 39th | SP Freddy Garcia Sea |
| 5 | 58th | RP Trevor Hoffman SD |
| 6 | 63rd | 1B Richie Sexson Mil |
| 7 | 82nd | RP Troy Percival Ana |
| 8 | 87th | OF Andruw Jones Atl |
| 9 | 106th | 1B Paul Konerko ChA |
| 10 | 111th | OF Richard Hidalgo Hou |
| 11 | 130th | C Toby Hall TB |
| 12 | 135th | SP Randy Wolf Phi |
| 13 | 154th | SP Kelvim Escobar Tor |
| 14 | 159th | SP Chris Carpenter Tor |
| 15 | 178th | 1B Tony Clark Bos |
| 16 | 183rd | SP Jarrod Washburn Ana |
| 17 | 202nd | 2B Luis Rivas Min |
| 18 | 207th | OF Matt Lawton Cle |
| 19 | 226th | C Ben Molina Ana |
| 20 | 231st | SP Danys Baez Cle |
| 21 | 250th | SS David Eckstein Ana |
| 22 | 255th | 2B Marcus Giles Atl |
| 23 | 274th | 3B Joe Randa KC |
| 24 | 279th | OF Jeremy Giambi Oak |
| 25 | 298th | SP Miguel Batista Ari |
| 26 | 303rd | C Einar Diaz Cle |
| 27 | 322nd | OF Steve Finley Ari |
| 28 | 327th | SP Erik Hiljus Oak |
| 29 | 346th | RP Jose Jimenez Col |