| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 1B Todd Helton Col |
| 2 | 23rd | OF Juan Gonzalez Tex |
| 3 | 26th | OF Larry Walker Col |
| 4 | 47th | SP Barry Zito Oak |
| 5 | 50th | SP Kerry Wood ChN |
| 6 | 71st | SP Wade Miller Hou |
| 7 | 74th | C Jason Kendall Pit |
| 8 | 95th | RP Ugueth Urbina Bos |
| 9 | 98th | 1B Sean Casey Cin |
| 10 | 119th | 3B Aaron Boone Cin |
| 11 | 122nd | OF Darin Erstad Ana |
| 12 | 143rd | SS Orlando Cabrera Mon |
| 13 | 146th | 2B Adam Kennedy Ana |
| 14 | 167th | RP Danny Graves Cin |
| 15 | 170th | SS Edgar Renteria StL |
| 16 | 191st | OF Tim Salmon Ana |
| 17 | 194th | SP Jason Schmidt SF |
| 18 | 215th | 1B Steve Cox TB |
| 19 | 218th | SP Juan Cruz ChN |
| 20 | 239th | 3B Tony Batista Bal |
| 21 | 242nd | SP Brian Lawrence SD |
| 22 | 263rd | 2B Jay Bell Ari |
| 23 | 266th | OF Vernon Wells Tor |
| 24 | 287th | SP Jose Rijo Cin |
| 25 | 290th | C Damian Miller Ari |
| 26 | 311th | SP Andy Benes StL |
| 27 | 314th | OF Mark McLemore Sea |
| 28 | 335th | OF Ruben Sierra Sea |
| 29 | 338th | SP Luke Prokopec Tor |