| Round | Overall | Player |
|---|---|---|
| 1 | 5th | C Mike Piazza NYN |
| 2 | 20th | SS Nomar Garciaparra Bos |
| 3 | 29th | OF Ken Griffey Jr Cin |
| 4 | 44th | SP Greg Maddux Atl |
| 5 | 53rd | 2B Alfonso Soriano NYA |
| 6 | 68th | 3B Aramis Ramirez Pit |
| 7 | 77th | OF Cliff Floyd Fla |
| 8 | 92nd | 1B Mo Vaughn NYN |
| 9 | 101st | SP Andy Pettitte NYA |
| 10 | 116th | RP Bob Wickman Cle |
| 11 | 125th | OF Pat Burrell Phi |
| 12 | 140th | SP A.J. Burnett Fla |
| 13 | 149th | SP Robert Person Phi |
| 14 | 164th | SP Pedro Astacio NYN |
| 15 | 173rd | 1B Travis Lee Phi |
| 16 | 188th | OF Torii Hunter Min |
| 17 | 197th | SP Jason Marquis Atl |
| 18 | 212th | SP Kyle Farnsworth ChN |
| 19 | 221st | RP John Rocker Tex |
| 20 | 236th | 3B Morgan Ensberg Hou |
| 21 | 245th | 2B Fernando Vina StL |
| 22 | 260th | SP Jeff D'Amico NYN |
| 23 | 269th | C A.J. Pierzynski Min |
| 24 | 284th | OF Greg Vaughn TB |
| 25 | 293rd | OF Brady Anderson Cle |
| 26 | 308th | RP Tom Gordon ChN |
| 27 | 317th | OF Rondell White NYA |
| 28 | 332nd | SS Rey Ordonez NYN |
| 29 | 341st | RP Jeff Shaw LA |