| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Jason Giambi NYA |
| 2 | 22nd | OF Luis Gonzalez Ari |
| 3 | 27th | OF Lance Berkman Hou |
| 4 | 46th | 2B Bret Boone Sea |
| 5 | 51st | 3B Eric Chavez Oak |
| 6 | 70th | SP Darryl Kile StL |
| 7 | 75th | RP Keith Foulke ChA |
| 8 | 94th | SP Brad Radke Min |
| 9 | 99th | OF Jim Edmonds StL |
| 10 | 118th | SP Brad Penny Fla |
| 11 | 123rd | SS Juan Uribe Col |
| 12 | 142nd | 1B Tino Martinez StL |
| 13 | 147th | SP Woody Williams StL |
| 14 | 166th | OF Todd Hollandsworth Col |
| 15 | 171st | RP Byung-Hyun Kim Ari |
| 16 | 190th | C Jason Varitek Bos |
| 17 | 195th | SP John Burkett Bos |
| 18 | 214th | SP Carlos Hernandez Hou |
| 19 | 219th | 3B Todd Zeile Col |
| 20 | 238th | SS Jose Hernandez Mil |
| 21 | 243rd | 2B Mark Grudzielanek LA |
| 22 | 262nd | SP Kenny Rogers Tex |
| 23 | 267th | OF Shane Spencer NYA |
| 24 | 286th | DH David Ortiz Min |
| 25 | 291st | C Jason LaRue Cin |
| 26 | 310th | OF Russ Branyan Cle |
| 27 | 315th | 1B Mark Grace Ari |
| 28 | 334th | RP Bob Howry ChA |
| 29 | 339th | RP Bret Prinz Ari |