| Round | Overall | Player |
|---|---|---|
| 1 | 6th | SP Randy Johnson Ari |
| 2 | 19th | SP Roger Clemens NYA |
| 3 | 30th | SS Miguel Tejada Oak |
| 4 | 43rd | 1B Rafael Palmeiro Tex |
| 5 | 54th | OF Adam Dunn Cin |
| 6 | 67th | 2B Ray Durham ChA |
| 7 | 78th | OF Ryan Klesko SD |
| 8 | 91st | RP Billy Koch Oak |
| 9 | 102nd | OF Carl Everett Tex |
| 10 | 115th | SP C.C. Sabathia Cle |
| 11 | 126th | OF Johnny Damon Bos |
| 12 | 139th | SP Ryan Dempster Fla |
| 13 | 150th | SP Ramon Ortiz Ana |
| 14 | 163rd | 3B Jose Valentin ChA |
| 15 | 174th | OF Jermaine Dye Oak |
| 16 | 187th | SP Orlando Hernandez NYA |
| 17 | 198th | C Ramon Hernandez Oak |
| 18 | 211th | 1B Carlos Pena Oak |
| 19 | 222nd | RP Mike Williams Pit |
| 20 | 235th | SS Julio Lugo Hou |
| 21 | 246th | OF Gabe Kapler Tex |
| 22 | 259th | SP Garrett Stephenson StL |
| 23 | 270th | 3B Eric Hinske Tor |
| 24 | 283rd | 2B Frank Menechino Oak |
| 25 | 294th | 2B D'Angelo Jimenez SD |
| 26 | 307th | C Mitch Meluskey Det |
| 27 | 318th | SP Ismael Valdez Tex |
| 28 | 331st | 1B Erubiel Durazo Ari |
| 29 | 342nd | OF Austin Kearns Cin |