| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Manny Ramirez Bos |
| 2 | 13th | SS Derek Jeter NYA |
| 3 | 36th | OF Brian S. Giles Pit |
| 4 | 37th | 3B Scott Rolen Phi |
| 5 | 60th | 1B Mike Sweeney KC |
| 6 | 61st | 2B Jeff Kent SF |
| 7 | 84th | OF J.D. Drew StL |
| 8 | 85th | SP Russ Ortiz SF |
| 9 | 108th | SP Tom Glavine Atl |
| 10 | 109th | OF Geoff Jenkins Mil |
| 11 | 132nd | SP Joe Mays Min |
| 12 | 133rd | SP Jamie Moyer Sea |
| 13 | 156th | C Ben Petrick Col |
| 14 | 157th | SP Kazuhisa Ishii LA |
| 15 | 180th | SP Cory Lidle Oak |
| 16 | 181st | DH Ellis Burks Cle |
| 17 | 204th | SP Steve Sparks Det |
| 18 | 205th | SP Hideo Nomo LA |
| 19 | 228th | SP Livan Hernandez SF |
| 20 | 229th | SP Albie Lopez Atl |
| 21 | 252nd | 1B Lee Stevens Mon |
| 22 | 253rd | 3B Dean Palmer Det |
| 23 | 276th | C Raul Casanova Mil |
| 24 | 277th | OF Rusty Greer Tex |
| 25 | 300th | SP Sidney Ponson Bal |
| 26 | 301st | 2B Ron Belliard Mil |
| 27 | 324th | 2B Jose Offerman Bos |
| 28 | 325th | SS Neifi Perez KC |
| 29 | 348th | SP Joe Kennedy TB |