| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | SP Pedro Martinez Bos |
| 3 | 25th | SP Mike Mussina NYA |
| 4 | 48th | SP Greg Maddux Atl |
| 5 | 49th | 3B Eric Chavez Oak |
| 6 | 72nd | 1B Mike Sweeney KC |
| 7 | 73rd | OF Adam Dunn Cin |
| 8 | 96th | OF Andruw Jones Atl |
| 9 | 97th | C Mike Lieberthal Phi |
| 10 | 120th | OF Pat Burrell Phi |
| 11 | 121st | OF Jeromy Burnitz NYN |
| 12 | 144th | SP Kelvim Escobar Tor |
| 13 | 145th | SP Bud Smith StL |
| 14 | 168th | RP Byung-Hyun Kim Ari |
| 15 | 169th | SP Ben Sheets Mil |
| 16 | 192nd | 2B Eric Young Mil |
| 17 | 193rd | OF Carl Everett Tex |
| 18 | 216th | OF Ben Grieve TB |
| 19 | 217th | SP Mark Prior ChN |
| 20 | 240th | 2B Marcus Giles Atl |
| 21 | 241st | 1B Derrek Lee Fla |
| 22 | 264th | 3B Todd Zeile Col |
| 23 | 265th | SP James Baldwin Sea |
| 24 | 288th | OF Jeremy Giambi Oak |
| 25 | 289th | C Michael Barrett Mon |
| 26 | 312th | RP Chad Fox Mil |
| 27 | 313th | OF Mark Kotsay SD |
| 28 | 336th | SS Mike Bordick Bal |
| 29 | 337th | SP Jeff D'Amico NYN |