| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Sammy Sosa ChN |
| 2 | 21st | 2B Roberto Alomar NYN |
| 3 | 28th | RP Mariano Rivera NYA |
| 4 | 45th | 1B Fred McGriff ChN |
| 5 | 52nd | C Paul Lo Duca LA |
| 6 | 69th | 3B Corey Koskie Min |
| 7 | 76th | SS Cristian Guzman Min |
| 8 | 93rd | SP Jamie Moyer Sea |
| 9 | 100th | OF Jim Edmonds StL |
| 10 | 117th | SP Andy Pettitte NYA |
| 11 | 124th | OF Trot Nixon Bos |
| 12 | 141st | SP Todd Stottlemyre Ari |
| 13 | 148th | RP Tom Gordon ChN |
| 14 | 165th | OF Todd Hollandsworth Col |
| 15 | 172nd | SP Shawn Estes NYN |
| 16 | 189th | SP Kevin Appier Ana |
| 17 | 196th | OF Rickey Henderson Bos |
| 18 | 213th | C Ben Davis Sea |
| 19 | 220th | SP Jason Bere ChN |
| 20 | 237th | OF Reggie Sanders SF |
| 21 | 244th | SP Denny Neagle Col |
| 22 | 261st | 2B Damion Easley Det |
| 23 | 268th | 1B Kevin Young Pit |
| 24 | 285th | SP Steve Trachsel NYN |
| 25 | 292nd | SS Carlos Guillen Sea |
| 26 | 309th | SP Albie Lopez Atl |
| 27 | 316th | 3B Robin Ventura NYA |
| 28 | 333rd | SP Tim Wakefield Bos |
| 29 | 340th | SP Octavio Dotel Hou |