| Round | Overall | Player |
|---|---|---|
| 1 | 10th | 3B Troy Glaus Ana |
| 2 | 15th | OF Larry Walker Col |
| 3 | 34th | SS Miguel Tejada Oak |
| 4 | 39th | SP Tim Hudson Oak |
| 5 | 58th | 3B Edgardo Alfonzo NYN |
| 6 | 63rd | SS Jimmy Rollins Phi |
| 7 | 82nd | 2B Jose Vidro Mon |
| 8 | 87th | 2B Craig Biggio Hou |
| 9 | 106th | OF Moises Alou ChN |
| 10 | 111th | 1B Sean Casey Cin |
| 11 | 130th | 3B Jeff Cirillo Sea |
| 12 | 135th | 1B Tony Clark Bos |
| 13 | 154th | SP Chris Carpenter Tor |
| 14 | 159th | SP Mike Hampton Col |
| 15 | 178th | OF Russ Branyan Cle |
| 16 | 183rd | SP Joel Pineiro Sea |
| 17 | 202nd | SP Brandon Duckworth Phi |
| 18 | 207th | 3B Fernando Tatis Mon |
| 19 | 226th | OF Kenny Lofton ChA |
| 20 | 231st | OF Jeff Conine Bal |
| 21 | 250th | C Wiklenman Gonzalez SD |
| 22 | 255th | DH David Ortiz Min |
| 23 | 274th | OF Vernon Wells Tor |
| 24 | 279th | SP Dustin Hermanson Bos |
| 25 | 298th | SP Sidney Ponson Bal |
| 26 | 303rd | SP Omar Daal LA |
| 27 | 322nd | SP Scott Schoeneweis Ana |
| 28 | 327th | SP Chris George KC |
| 29 | 346th | RP Jose Jimenez Col |