| Round | Overall | Player |
|---|---|---|
| 1 | 11th | C Mike Piazza NYN |
| 2 | 14th | 1B Carlos Delgado Tor |
| 3 | 35th | SS Derek Jeter NYA |
| 4 | 38th | OF Bobby Abreu Phi |
| 5 | 59th | OF Brian S. Giles Pit |
| 6 | 62nd | RP Billy Wagner Hou |
| 7 | 83rd | 2B Jeff Kent SF |
| 8 | 86th | SP Kerry Wood ChN |
| 9 | 107th | OF Jermaine Dye Oak |
| 10 | 110th | SP Bartolo Colon Cle |
| 11 | 131st | SP Ryan Dempster Fla |
| 12 | 134th | RP Jose Mesa Phi |
| 13 | 155th | 3B Hank Blalock Tex |
| 14 | 158th | OF Daryle Ward Hou |
| 15 | 179th | 1B Tino Martinez StL |
| 16 | 182nd | SP Jarrod Washburn Ana |
| 17 | 203rd | 1B Dmitri Young Det |
| 18 | 206th | SP Danys Baez Cle |
| 19 | 227th | OF Chuck Knoblauch KC |
| 20 | 230th | SP Jeff Suppan KC |
| 21 | 251st | C Ben Petrick Col |
| 22 | 254th | SP Rick Helling Ari |
| 23 | 275th | SP Glendon Rusch Mil |
| 24 | 278th | 2B Carlos Febles KC |
| 25 | 299th | RP Jeff Zimmerman Tex |
| 26 | 302nd | RP Eddie Guardado Min |
| 27 | 323rd | 3B Shea Hillenbrand Bos |
| 28 | 326th | SP Carl Pavano Mon |
| 29 | 347th | SP Brian Tollberg SD |