| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | 1B Todd Helton Col |
| 2 | 22nd | OF Chipper Jones Atl |
| 3 | 27th | SS Nomar Garciaparra Bos |
| 4 | 46th | SP Freddy Garcia Sea |
| 5 | 51st | SP Matt Morris StL |
| 6 | 70th | SP Roy Oswalt Hou |
| 7 | 75th | SP Javier Vazquez Mon |
| 8 | 94th | 3B Adrian Beltre LA |
| 9 | 99th | OF Bernie Williams NYA |
| 10 | 118th | OF Raul Mondesi Tor |
| 11 | 123rd | OF Preston Wilson Fla |
| 12 | 142nd | 2B Todd Walker Cin |
| 13 | 147th | C Toby Hall TB |
| 14 | 166th | SP A.J. Burnett Fla |
| 15 | 171st | RP Bob Wickman Cle |
| 16 | 190th | SP Kevin Millwood Atl |
| 17 | 195th | SP Roy Halladay Tor |
| 18 | 214th | SP Miguel Batista Ari |
| 19 | 219th | 1B Travis Lee Phi |
| 20 | 238th | OF Torii Hunter Min |
| 21 | 243rd | 3B Morgan Ensberg Hou |
| 22 | 262nd | 1B Carlos Pena Oak |
| 23 | 267th | OF Rondell White NYA |
| 24 | 286th | RP Scott Strickland Mon |
| 25 | 291st | 2B Ricky Gutierrez Cle |
| 26 | 310th | C Damian Miller Ari |
| 27 | 315th | RP Willis Roberts Bal |
| 28 | 334th | SS Royce Clayton ChA |
| 29 | 339th | SP Josh Towers Bal |