| Round | Overall | Player |
|---|---|---|
| 1 | 9th | C Ivan Rodriguez Tex |
| 2 | 16th | 1B Rafael Palmeiro Tex |
| 3 | 33rd | 1B Frank Thomas ChA |
| 4 | 40th | 3B Scott Rolen Phi |
| 5 | 57th | RP Kazuhiro Sasaki Sea |
| 6 | 64th | RP John Smoltz Atl |
| 7 | 81st | RP Troy Percival Ana |
| 8 | 88th | OF Carlos Beltran KC |
| 9 | 105th | 2B Luis Castillo Fla |
| 10 | 112th | OF Shannon Stewart Tor |
| 11 | 129th | SP Mark Buehrle ChA |
| 12 | 136th | SS Orlando Cabrera Mon |
| 13 | 153rd | OF Roger Cedeno NYN |
| 14 | 160th | SP Randy Wolf Phi |
| 15 | 177th | OF Juan Pierre Col |
| 16 | 184th | SP Jason Schmidt SF |
| 17 | 201st | OF Robert Fick Det |
| 18 | 208th | SP Todd Ritchie ChA |
| 19 | 225th | SP Brian Lawrence SD |
| 20 | 232nd | SS David Eckstein Ana |
| 21 | 249th | 2B Brent Abernathy TB |
| 22 | 256th | C Ben Molina Ana |
| 23 | 273rd | 1B David Segui Bal |
| 24 | 280th | SP Kris Benson Pit |
| 25 | 297th | SP Livan Hernandez SF |
| 26 | 304th | SP Matt Clement ChN |
| 27 | 321st | 3B Greg Norton Col |
| 28 | 328th | RP John Rocker Tex |
| 29 | 345th | OF Marty Cordova Bal |