| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Vladimir Guerrero Mon |
| 2 | 13th | OF Manny Ramirez Bos |
| 3 | 36th | 1B Phil Nevin SD |
| 4 | 37th | OF Ryan Klesko SD |
| 5 | 60th | RP Keith Foulke ChA |
| 6 | 61st | RP Trevor Hoffman SD |
| 7 | 84th | RP Jason Isringhausen StL |
| 8 | 85th | C Javy Lopez Atl |
| 9 | 108th | SP Darryl Kile StL |
| 10 | 109th | SP Brad Radke Min |
| 11 | 132nd | SP Jeff Weaver Det |
| 12 | 133rd | SP Robert Person Phi |
| 13 | 156th | 3B Mike Lowell Fla |
| 14 | 157th | SP Tony Armas Jr. Mon |
| 15 | 180th | 2B Luis Rivas Min |
| 16 | 181st | SP Ramon Ortiz Ana |
| 17 | 204th | SS Edgar Renteria StL |
| 18 | 205th | SP Kevin Jarvis SD |
| 19 | 228th | OF Tim Salmon Ana |
| 20 | 229th | DH Brad Fullmer Ana |
| 21 | 252nd | C Mike Matheny StL |
| 22 | 253rd | SP Kip Wells Pit |
| 23 | 276th | 1B Eric Karros LA |
| 24 | 277th | SP Luke Prokopec Tor |
| 25 | 300th | 2B Jerry Hairston Jr. Bal |
| 26 | 301st | SS Felipe Lopez Tor |
| 27 | 324th | OF Jeffrey Hammonds Mil |
| 28 | 325th | 1B Andres Galarraga Mon |
| 29 | 348th | 3B Eric Hinske Tor |