| Round | Overall | Player |
|---|---|---|
| 1 | 4th | SP Pedro Martinez Bos |
| 2 | 21st | SP Greg Maddux Atl |
| 3 | 28th | SP Mike Mussina NYA |
| 4 | 45th | SP Roger Clemens NYA |
| 5 | 52nd | SP Kevin Brown LA |
| 6 | 69th | 1B Frank Thomas ChA |
| 7 | 76th | 1B Mo Vaughn NYN |
| 8 | 93rd | SS Juan Uribe Col |
| 9 | 100th | SS Rafael Furcal Atl |
| 10 | 117th | 2B Craig Biggio Hou |
| 11 | 124th | 3B Hank Blalock Tex |
| 12 | 141st | DH Edgar Martinez Sea |
| 13 | 148th | DH Ellis Burks Cle |
| 14 | 165th | OF Kenny Lofton ChA |
| 15 | 172nd | 2B Eric Young Mil |
| 16 | 189th | OF Kevin Millar Fla |
| 17 | 196th | 3B Vinny Castilla Atl |
| 18 | 213th | OF Reggie Sanders SF |
| 19 | 220th | OF Jeremy Giambi Oak |
| 20 | 237th | C Damian Miller Ari |
| 21 | 244th | C Mike Rivera Det |
| 22 | 261st | C Mitch Meluskey Det |
| 23 | 268th | SP Danys Baez Cle |
| 24 | 285th | SP Ismael Valdez Tex |
| 25 | 292nd | OF Mark Kotsay SD |
| 26 | 309th | OF Marty Cordova Bal |
| 27 | 316th | DH David Ortiz Min |
| 28 | 333rd | C Gary Bennett Col |
| 29 | 340th | SS Cesar Izturis LA |