| Round | Overall | Player |
|---|---|---|
| 1 | 7th | 1B Jason Giambi NYA |
| 2 | 18th | OF Lance Berkman Hou |
| 3 | 31st | SP Freddy Garcia Sea |
| 4 | 42nd | 3B Corey Koskie Min |
| 5 | 55th | 2B Luis Castillo Fla |
| 6 | 66th | C Jason Kendall Pit |
| 7 | 79th | SS Cristian Guzman Min |
| 8 | 90th | RP Billy Wagner Hou |
| 9 | 103rd | SP Mark Buehrle ChA |
| 10 | 114th | SP Roy Halladay Tor |
| 11 | 127th | OF Mike Cameron Sea |
| 12 | 138th | RP Jeff Zimmerman Tex |
| 13 | 151st | OF Garret Anderson Ana |
| 14 | 162nd | SP Todd Ritchie ChA |
| 15 | 175th | OF Trot Nixon Bos |
| 16 | 186th | 3B Tony Batista Bal |
| 17 | 199th | SP Chris Carpenter Tor |
| 18 | 210th | 2B Luis Rivas Min |
| 19 | 223rd | 1B Doug Mientkiewicz Min |
| 20 | 234th | SS Neifi Perez KC |
| 21 | 247th | C Ben Davis Sea |
| 22 | 258th | RP Roberto Hernandez KC |
| 23 | 271st | SP Kip Wells Pit |
| 24 | 282nd | OF Doug Glanville Phi |
| 25 | 295th | OF Jacque Jones Min |
| 26 | 306th | SP Ruben Quevedo Mil |
| 27 | 319th | SP Elmer Dessens Cin |
| 28 | 330th | OF Mark Quinn KC |
| 29 | 343rd | 3B Tyler Houston Mil |