| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Barry Bonds SF |
| 2 | 15th | SP Randy Johnson Ari |
| 3 | 34th | SS Miguel Tejada Oak |
| 4 | 39th | 2B Bret Boone Sea |
| 5 | 58th | 1B Phil Nevin SD |
| 6 | 63rd | C Paul Lo Duca LA |
| 7 | 82nd | SP Wade Miller Hou |
| 8 | 87th | SP Chan Ho Park Tex |
| 9 | 106th | RP John Smoltz Atl |
| 10 | 111th | SP Eric Milton Min |
| 11 | 130th | 3B Adrian Beltre LA |
| 12 | 135th | OF Shannon Stewart Tor |
| 13 | 154th | OF Richard Hidalgo Hou |
| 14 | 159th | OF Daryle Ward Hou |
| 15 | 178th | OF Vernon Wells Tor |
| 16 | 183rd | SP Woody Williams StL |
| 17 | 202nd | SP Jason Marquis Atl |
| 18 | 207th | 3B Robin Ventura NYA |
| 19 | 226th | SP John Burkett Bos |
| 20 | 231st | SP Paul Abbott Sea |
| 21 | 250th | SP Terry Adams Phi |
| 22 | 255th | SP Paul Wilson TB |
| 23 | 274th | 2B Adam Kennedy Ana |
| 24 | 279th | SS David Eckstein Ana |
| 25 | 298th | 1B Scott Hatteberg Oak |
| 26 | 303rd | 1B Eric Karros LA |
| 27 | 322nd | RP John Rocker Tex |
| 28 | 327th | RP Jose Jimenez Col |
| 29 | 346th | 1B Erubiel Durazo Ari |