| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 1B Todd Helton Col |
| 2 | 23rd | SP Tim Hudson Oak |
| 3 | 26th | OF Magglio Ordonez ChA |
| 4 | 47th | 3B Scott Rolen Phi |
| 5 | 50th | OF Brian S. Giles Pit |
| 6 | 71st | OF Gary Sheffield Atl |
| 7 | 74th | C Mike Lieberthal Phi |
| 8 | 95th | 1B Paul Konerko ChA |
| 9 | 98th | SP Josh Beckett Fla |
| 10 | 119th | 2B Jose Ortiz Col |
| 11 | 122nd | RP Anthony Alford ChN |
| 12 | 143rd | SP A.J. Burnett Fla |
| 13 | 146th | C Ramon Hernandez Oak |
| 14 | 167th | OF Brian Jordan LA |
| 15 | 170th | SP Brandon Duckworth Phi |
| 16 | 191st | SS Barry Larkin Cin |
| 17 | 194th | SP Kris Benson Pit |
| 18 | 215th | RP Eddie Guardado Min |
| 19 | 218th | 2B Fernando Vina StL |
| 20 | 239th | DH Nick Johnson NYA |
| 21 | 242nd | 1B Tony Clark Bos |
| 22 | 263rd | SP Derek Lowe Bos |
| 23 | 266th | OF Ben Grieve TB |
| 24 | 287th | SS Ramon Vazquez SD |
| 25 | 290th | SP Scott Schoeneweis Ana |
| 26 | 311th | SS Felipe Lopez Tor |
| 27 | 314th | SP Juan Cruz ChN |
| 28 | 335th | RP Paul Quantrill LA |
| 29 | 338th | SP Sidney Ponson Bal |