| Round | Overall | Player |
|---|---|---|
| 1 | 11th | 3B Albert Pujols StL |
| 2 | 14th | 1B Jeff Bagwell Hou |
| 3 | 35th | OF Ken Griffey Jr Cin |
| 4 | 38th | SP Matt Morris StL |
| 5 | 59th | C Jorge Posada NYA |
| 6 | 62nd | SP Javier Vazquez Mon |
| 7 | 83rd | SS Jimmy Rollins Phi |
| 8 | 86th | OF Jim Edmonds StL |
| 9 | 107th | SP Brad Radke Min |
| 10 | 110th | SP Brad Penny Fla |
| 11 | 131st | OF Raul Mondesi Tor |
| 12 | 134th | RP Bob Wickman Cle |
| 13 | 155th | OF Juan Pierre Col |
| 14 | 158th | 2B Todd Walker Cin |
| 15 | 179th | 3B Sean Burroughs SD |
| 16 | 182nd | SP Jarrod Washburn Ana |
| 17 | 203rd | 1B Derrek Lee Fla |
| 18 | 206th | SP Joel Pineiro Sea |
| 19 | 227th | OF Jeromy Burnitz NYN |
| 20 | 230th | RP Braden Looper Fla |
| 21 | 251st | SP Orlando Hernandez NYA |
| 22 | 254th | 2B Damion Easley Det |
| 23 | 275th | C Brad Ausmus Hou |
| 24 | 278th | SS Jose Hernandez Mil |
| 25 | 299th | SP Steve Trachsel NYN |
| 26 | 302nd | OF Rondell White NYA |
| 27 | 323rd | SP Kirk Rueter SF |
| 28 | 326th | OF David Justice Oak |
| 29 | 347th | SP Brian Tollberg SD |