| Round | Overall | Player |
|---|---|---|
| 1 | 6th | 3B Troy Glaus Ana |
| 2 | 19th | OF Manny Ramirez Bos |
| 3 | 30th | 2B Roberto Alomar NYN |
| 4 | 43rd | 1B Mike Sweeney KC |
| 5 | 54th | SS Rich Aurilia SF |
| 6 | 67th | SP Kerry Wood ChN |
| 7 | 78th | SP Bartolo Colon Cle |
| 8 | 91st | RP Trevor Hoffman SD |
| 9 | 102nd | SP Russ Ortiz SF |
| 10 | 115th | SP Ryan Dempster Fla |
| 11 | 126th | OF Cliff Floyd Fla |
| 12 | 139th | RP Byung-Hyun Kim Ari |
| 13 | 150th | OF Jermaine Dye Oak |
| 14 | 163rd | OF Darin Erstad Ana |
| 15 | 174th | C Charles Johnson Fla |
| 16 | 187th | SP Kelvim Escobar Tor |
| 17 | 198th | SP Carlos Hernandez Hou |
| 18 | 211th | SP Mark Prior ChN |
| 19 | 222nd | OF Todd Hollandsworth Col |
| 20 | 235th | SP Rick Reed Min |
| 21 | 246th | 3B Eric Hinske Tor |
| 22 | 259th | SP Odalis Perez LA |
| 23 | 270th | 1B Dmitri Young Det |
| 24 | 283rd | C Michael Barrett Mon |
| 25 | 294th | 2B Wilson Betemit Atl |
| 26 | 307th | SP Eric Gagne LA |
| 27 | 318th | 2B Jose Offerman Bos |
| 28 | 331st | OF Jack Cust Col |
| 29 | 342nd | SS Rey Sanchez Bos |