| Round | Overall | Player |
|---|---|---|
| 1 | 9th | C Ivan Rodriguez Tex |
| 2 | 16th | SS Derek Jeter NYA |
| 3 | 33rd | 2B Alfonso Soriano NYA |
| 4 | 40th | 3B Eric Chavez Oak |
| 5 | 57th | RP Kazuhiro Sasaki Sea |
| 6 | 64th | SP Mark Mulder Oak |
| 7 | 81st | RP Billy Koch Oak |
| 8 | 88th | RP Troy Percival Ana |
| 9 | 105th | SP Al Leiter NYN |
| 10 | 112th | SP Andy Pettitte NYA |
| 11 | 129th | 1B Sean Casey Cin |
| 12 | 136th | OF Johnny Damon Bos |
| 13 | 153rd | OF Pat Burrell Phi |
| 14 | 160th | OF Carlos Lee ChA |
| 15 | 177th | OF Frank Catalanotto Tex |
| 16 | 184th | 1B Carlos Pena Oak |
| 17 | 201st | SP Jason Johnson Bal |
| 18 | 208th | OF Tim Salmon Ana |
| 19 | 225th | 2B D'Angelo Jimenez SD |
| 20 | 232nd | SS Omar Vizquel Cle |
| 21 | 249th | C Ben Molina Ana |
| 22 | 256th | 3B Jared Sandberg TB |
| 23 | 273rd | SP Albie Lopez Atl |
| 24 | 280th | OF Torii Hunter Min |
| 25 | 297th | 3B Michael Cuddyer Min |
| 26 | 304th | SP Shawn Estes NYN |
| 27 | 321st | SP Andy Ashby LA |
| 28 | 328th | OF Steve Finley Ari |
| 29 | 345th | 1B Steve Cox TB |