| Round | Overall | Player |
|---|---|---|
| 1 | 4th | OF Sammy Sosa ChN |
| 2 | 21st | OF Lance Berkman Hou |
| 3 | 28th | 3B Eric Chavez Oak |
| 4 | 45th | RP Robb Nen SF |
| 5 | 52nd | 1B Jim Thome Cle |
| 6 | 69th | 3B Aramis Ramirez Pit |
| 7 | 76th | OF Adam Dunn Cin |
| 8 | 93rd | 2B Jose Vidro Mon |
| 9 | 100th | SP Darryl Kile StL |
| 10 | 117th | SP Eric Milton Min |
| 11 | 124th | 3B Hank Blalock Tex |
| 12 | 141st | DH Edgar Martinez Sea |
| 13 | 148th | SS Juan Uribe Col |
| 14 | 165th | SP Ben Sheets Mil |
| 15 | 172nd | OF Daryle Ward Hou |
| 16 | 189th | SP Kazuhisa Ishii LA |
| 17 | 196th | SP Jarrod Washburn Ana |
| 18 | 213th | SP Chris Carpenter Tor |
| 19 | 220th | RP Roberto Hernandez KC |
| 20 | 237th | SP Kris Benson Pit |
| 21 | 244th | SP Ramon Ortiz Ana |
| 22 | 261st | SP Juan Cruz ChN |
| 23 | 268th | C Todd Hundley ChN |
| 24 | 285th | 1B Lee Stevens Mon |
| 25 | 292nd | 1B Erubiel Durazo Ari |
| 26 | 309th | SP Ismael Valdez Tex |
| 27 | 316th | OF Bubba Trammell SD |
| 28 | 333rd | 2B Damion Easley Det |
| 29 | 340th | SP Odalis Perez LA |