| Round | Overall | Player |
|---|---|---|
| 1 | 8th | OF Barry Bonds SF |
| 2 | 17th | OF Shawn Green LA |
| 3 | 32nd | OF Juan Gonzalez Tex |
| 4 | 41st | SP Matt Morris StL |
| 5 | 56th | RP Armando Benitez NYN |
| 6 | 65th | RP Billy Wagner Hou |
| 7 | 80th | C Jason Kendall Pit |
| 8 | 89th | SS Cristian Guzman Min |
| 9 | 104th | 1B Paul Konerko ChA |
| 10 | 113th | SP Robert Person Phi |
| 11 | 128th | SP Joe Mays Min |
| 12 | 137th | OF Garret Anderson Ana |
| 13 | 152nd | 3B Aaron Boone Cin |
| 14 | 161st | SP Tony Armas Jr. Mon |
| 15 | 176th | 3B Jose Valentin ChA |
| 16 | 185th | SS Orlando Cabrera Mon |
| 17 | 200th | C Ramon Hernandez Oak |
| 18 | 209th | OF Corey Patterson ChN |
| 19 | 224th | OF Mark Kotsay SD |
| 20 | 233rd | 2B Ron Belliard Mil |
| 21 | 248th | SP Bud Smith StL |
| 22 | 257th | 1B Eric Karros LA |
| 23 | 272nd | C Gregg Zaun Hou |
| 24 | 281st | SP Adam Eaton SD |
| 25 | 296th | SP Dave Coggin Phi |
| 26 | 305th | SP Chris Reitsma Cin |
| 27 | 320th | SP Jorge Julio Bal |
| 28 | 329th | 2B Wilson Betemit Atl |
| 29 | 344th | SP Joe Nathan SF |