| Round | Overall | Player |
|---|---|---|
| 1 | 11th | OF Manny Ramirez Bos |
| 2 | 14th | C Ivan Rodriguez Tex |
| 3 | 35th | SP Curt Schilling Ari |
| 4 | 38th | RP Trevor Hoffman SD |
| 5 | 59th | SS Rich Aurilia SF |
| 6 | 62nd | RP Troy Percival Ana |
| 7 | 83rd | 2B Craig Biggio Hou |
| 8 | 86th | SP Josh Beckett Fla |
| 9 | 107th | OF Shannon Stewart Tor |
| 10 | 110th | 1B John Olerud Sea |
| 11 | 131st | 3B Vinny Castilla Atl |
| 12 | 134th | SP Andy Pettitte NYA |
| 13 | 155th | OF Juan Pierre Col |
| 14 | 158th | OF Carlos Lee ChA |
| 15 | 179th | SP Mike Hampton Col |
| 16 | 182nd | SP Andy Benes StL |
| 17 | 203rd | SP Terry Adams Phi |
| 18 | 206th | 1B Tony Clark Bos |
| 19 | 227th | RP Eddie Guardado Min |
| 20 | 230th | 3B Dean Palmer Det |
| 21 | 251st | SS Barry Larkin Cin |
| 22 | 254th | 2B Jose Offerman Bos |
| 23 | 275th | OF Vernon Wells Tor |
| 24 | 278th | C Wiklenman Gonzalez SD |
| 25 | 299th | SP Denny Neagle Col |
| 26 | 302nd | DH Brad Fullmer Ana |
| 27 | 323rd | 3B Drew Henson NYA |
| 28 | 326th | OF Chuck Knoblauch KC |
| 29 | 347th | OF Brady Anderson Cle |