| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | SP Pedro Martinez Bos |
| 2 | 22nd | OF Larry Walker Col |
| 3 | 27th | SP Mark Mulder Oak |
| 4 | 46th | 1B Mike Sweeney KC |
| 5 | 51st | 2B Bret Boone Sea |
| 6 | 70th | RP Jason Isringhausen StL |
| 7 | 75th | C Paul Lo Duca LA |
| 8 | 94th | 3B Jeff Cirillo Sea |
| 9 | 99th | OF Jim Edmonds StL |
| 10 | 118th | OF Trot Nixon Bos |
| 11 | 123rd | SP A.J. Burnett Fla |
| 12 | 142nd | 1B Tino Martinez StL |
| 13 | 147th | SS Edgar Renteria StL |
| 14 | 166th | RP Mike Williams Pit |
| 15 | 171st | SP Derek Lowe Bos |
| 16 | 190th | OF Kenny Lofton ChA |
| 17 | 195th | C Jason Varitek Bos |
| 18 | 214th | SP Livan Hernandez SF |
| 19 | 219th | SS Neifi Perez KC |
| 20 | 238th | 1B Travis Lee Phi |
| 21 | 243rd | 3B Shane Halter Det |
| 22 | 262nd | SP Carl Pavano Mon |
| 23 | 267th | OF Jacque Jones Min |
| 24 | 286th | 2B Frank Menechino Oak |
| 25 | 291st | SP James Baldwin Sea |
| 26 | 310th | SP Jamey Wright Mil |
| 27 | 315th | OF Jeremy Giambi Oak |
| 28 | 334th | RP Matt Herges Mon |
| 29 | 339th | 2B Carlos Febles KC |