| Round | Overall | Player |
|---|---|---|
| 1 | 12th | OF Chipper Jones Atl |
| 2 | 13th | OF Bobby Abreu Phi |
| 3 | 36th | SS Miguel Tejada Oak |
| 4 | 37th | OF Brian S. Giles Pit |
| 5 | 60th | 2B Ray Durham ChA |
| 6 | 61st | 1B Richie Sexson Mil |
| 7 | 84th | SP Jon Lieber ChN |
| 8 | 85th | 1B Frank Thomas ChA |
| 9 | 108th | OF Carlos Beltran KC |
| 10 | 109th | SP Brad Radke Min |
| 11 | 132nd | SP Jeff Weaver Det |
| 12 | 133rd | RP Ugueth Urbina Bos |
| 13 | 156th | RP Byung-Hyun Kim Ari |
| 14 | 157th | SP Woody Williams StL |
| 15 | 180th | RP Scott Strickland Mon |
| 16 | 181st | SP Hideo Nomo LA |
| 17 | 204th | SP Shawn Estes NYN |
| 18 | 205th | SP Shane Reynolds Hou |
| 19 | 228th | 3B Todd Zeile Col |
| 20 | 229th | RP John Rocker Tex |
| 21 | 252nd | SP Randy Wolf Phi |
| 22 | 253rd | C Ben Petrick Col |
| 23 | 276th | 2B Marcus Giles Atl |
| 24 | 277th | OF Frank Catalanotto Tex |
| 25 | 300th | 1B David Segui Bal |
| 26 | 301st | SS Royce Clayton ChA |
| 27 | 324th | C A.J. Pierzynski Min |
| 28 | 325th | SP Doug Davis Tex |
| 29 | 348th | 3B Chris Stynes ChN |