| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | 3B Albert Pujols StL |
| 3 | 25th | OF Magglio Ordonez ChA |
| 4 | 48th | 2B Alfonso Soriano NYA |
| 5 | 49th | RP Armando Benitez NYN |
| 6 | 72nd | SP Kerry Wood ChN |
| 7 | 73rd | OF J.D. Drew StL |
| 8 | 96th | OF Moises Alou ChN |
| 9 | 97th | OF Juan Pierre Col |
| 10 | 120th | RP Byung-Hyun Kim Ari |
| 11 | 121st | OF Raul Mondesi Tor |
| 12 | 144th | SP Pedro Astacio NYN |
| 13 | 145th | 1B Tino Martinez StL |
| 14 | 168th | RP Mike Williams Pit |
| 15 | 169th | SP David Wells NYA |
| 16 | 192nd | C Ramon Hernandez Oak |
| 17 | 193rd | SP Hideo Nomo LA |
| 18 | 216th | SP Tony Armas Jr. Mon |
| 19 | 217th | SP Brandon Duckworth Phi |
| 20 | 240th | C Damian Miller Ari |
| 21 | 241st | 1B Doug Mientkiewicz Min |
| 22 | 264th | 2B Homer Bush Tor |
| 23 | 265th | SP Carl Pavano Mon |
| 24 | 288th | 3B Matt Williams Ari |
| 25 | 289th | SS Cesar Izturis LA |
| 26 | 312th | SP Brian Tollberg SD |
| 27 | 313th | OF Steve Finley Ari |
| 28 | 336th | 3B Shea Hillenbrand Bos |
| 29 | 337th | OF Chris Singleton Bal |