| Round | Overall | Player |
|---|---|---|
| 1 | 7th | C Mike Piazza NYN |
| 2 | 18th | 2B Roberto Alomar NYN |
| 3 | 31st | SS Miguel Tejada Oak |
| 4 | 42nd | 3B Scott Rolen Phi |
| 5 | 55th | RP Keith Foulke ChA |
| 6 | 66th | OF Andruw Jones Atl |
| 7 | 79th | 1B Jim Thome Cle |
| 8 | 90th | OF Carlos Beltran KC |
| 9 | 103rd | SP Bartolo Colon Cle |
| 10 | 114th | RP Jose Mesa Phi |
| 11 | 127th | SP Jeff Weaver Det |
| 12 | 138th | OF Jose Cruz Jr Tor |
| 13 | 151st | OF Shannon Stewart Tor |
| 14 | 162nd | SP Roy Halladay Tor |
| 15 | 175th | SP Jason Marquis Atl |
| 16 | 186th | 1B Tony Clark Bos |
| 17 | 199th | SS Barry Larkin Cin |
| 18 | 210th | SP Orlando Hernandez NYA |
| 19 | 223rd | 3B Joe Randa KC |
| 20 | 234th | SP Derek Lowe Bos |
| 21 | 247th | OF Kenny Lofton ChA |
| 22 | 258th | OF Kevin Millar Fla |
| 23 | 271st | SP Carlos Hernandez Hou |
| 24 | 282nd | RP Braden Looper Fla |
| 25 | 295th | 2B Ron Belliard Mil |
| 26 | 306th | SP Sidney Ponson Bal |
| 27 | 319th | SP Kip Wells Pit |
| 28 | 330th | C Brad Ausmus Hou |
| 29 | 343rd | SP Eric Gagne LA |