| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Manny Ramirez Bos |
| 2 | 15th | SP Greg Maddux Atl |
| 3 | 34th | OF Larry Walker Col |
| 4 | 39th | SP Freddy Garcia Sea |
| 5 | 58th | RP Robb Nen SF |
| 6 | 63rd | RP Jason Isringhausen StL |
| 7 | 82nd | 1B Frank Thomas ChA |
| 8 | 87th | 2B Craig Biggio Hou |
| 9 | 106th | SS Rafael Furcal Atl |
| 10 | 111th | OF Mike Cameron Sea |
| 11 | 130th | SP Jamie Moyer Sea |
| 12 | 135th | C Javy Lopez Atl |
| 13 | 154th | 3B Mike Lowell Fla |
| 14 | 159th | SP Ryan Dempster Fla |
| 15 | 178th | SP Aaron Sele Ana |
| 16 | 183rd | 1B Fred McGriff ChN |
| 17 | 202nd | 3B Todd Zeile Col |
| 18 | 207th | OF Torii Hunter Min |
| 19 | 226th | SP Paul Abbott Sea |
| 20 | 231st | C A.J. Pierzynski Min |
| 21 | 250th | 2B Jose Macias Det |
| 22 | 255th | SP Terry Adams Phi |
| 23 | 274th | OF Jeremy Giambi Oak |
| 24 | 279th | SP Jason Bere ChN |
| 25 | 298th | OF Bubba Trammell SD |
| 26 | 303rd | SP Miguel Batista Ari |
| 27 | 322nd | SS Adam Everett Hou |
| 28 | 327th | DH Brian Daubach Bos |
| 29 | 346th | C Jason LaRue Cin |