| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | 1B Todd Helton Col |
| 2 | 23rd | OF Lance Berkman Hou |
| 3 | 26th | RP Mariano Rivera NYA |
| 4 | 47th | SP Roy Oswalt Hou |
| 5 | 50th | 2B Jeff Kent SF |
| 6 | 71st | C Paul Lo Duca LA |
| 7 | 74th | 3B Aramis Ramirez Pit |
| 8 | 95th | OF Richard Hidalgo Hou |
| 9 | 98th | SP Josh Beckett Fla |
| 10 | 119th | OF Darin Erstad Ana |
| 11 | 122nd | SP Ben Sheets Mil |
| 12 | 143rd | OF Preston Wilson Fla |
| 13 | 146th | 3B Hank Blalock Tex |
| 14 | 167th | RP Scott Strickland Mon |
| 15 | 170th | SP Kazuhisa Ishii LA |
| 16 | 191st | SP Jeff D'Amico NYN |
| 17 | 194th | SS Edgar Renteria StL |
| 18 | 215th | SP Juan Cruz ChN |
| 19 | 218th | 2B Ricky Gutierrez Cle |
| 20 | 239th | RP Scott Eyre Tor |
| 21 | 242nd | DH David Ortiz Min |
| 22 | 263rd | 1B Kevin Young Pit |
| 23 | 266th | SP Tim Redding Hou |
| 24 | 287th | C Einar Diaz Cle |
| 25 | 290th | SP Jorge Julio Bal |
| 26 | 311th | OF Vernon Wells Tor |
| 27 | 314th | 3B Shane Halter Det |
| 28 | 335th | SP Kurt Ainsworth SF |
| 29 | 338th | OF Corey Patterson ChN |