| Round | Overall | Player |
|---|---|---|
| 1 | 8th | OF Barry Bonds SF |
| 2 | 17th | OF Luis Gonzalez Ari |
| 3 | 32nd | 1B Carlos Delgado Tor |
| 4 | 41st | 1B Rafael Palmeiro Tex |
| 5 | 56th | C Jorge Posada NYA |
| 6 | 65th | 2B Ray Durham ChA |
| 7 | 80th | OF Ryan Klesko SD |
| 8 | 89th | SP Al Leiter NYN |
| 9 | 104th | SS Cristian Guzman Min |
| 10 | 113th | RP Bob Wickman Cle |
| 11 | 128th | SP Joe Mays Min |
| 12 | 137th | SP Eric Milton Min |
| 13 | 152nd | OF Jeromy Burnitz NYN |
| 14 | 161st | OF Garret Anderson Ana |
| 15 | 176th | 3B Jose Valentin ChA |
| 16 | 185th | SP Robert Person Phi |
| 17 | 200th | SP Chris Carpenter Tor |
| 18 | 209th | SP Jarrod Washburn Ana |
| 19 | 224th | 3B Aaron Boone Cin |
| 20 | 233rd | SP Steve Sparks Det |
| 21 | 248th | 1B Derrek Lee Fla |
| 22 | 257th | SP Brian Lawrence SD |
| 23 | 272nd | DH Ellis Burks Cle |
| 24 | 281st | SP Albie Lopez Atl |
| 25 | 296th | C Raul Casanova Mil |
| 26 | 305th | OF Todd Hollandsworth Col |
| 27 | 320th | SS Royce Clayton ChA |
| 28 | 329th | 2B D'Angelo Jimenez SD |
| 29 | 344th | SP Paul Wilson TB |