| Round | Overall | Player |
|---|---|---|
| 1 | 11th | C Ivan Rodriguez Tex |
| 2 | 14th | OF Shawn Green LA |
| 3 | 35th | OF Juan Gonzalez Tex |
| 4 | 38th | 2B Bret Boone Sea |
| 5 | 59th | RP Trevor Hoffman SD |
| 6 | 62nd | SP Roger Clemens NYA |
| 7 | 83rd | 1B Mo Vaughn NYN |
| 8 | 86th | SP Chan Ho Park Tex |
| 9 | 107th | SS Orlando Cabrera Mon |
| 10 | 110th | OF Johnny Damon Bos |
| 11 | 131st | SP Andy Pettitte NYA |
| 12 | 134th | RP Matt Anderson Det |
| 13 | 155th | 3B Vinny Castilla Atl |
| 14 | 158th | SP Ramon Ortiz Ana |
| 15 | 179th | SP Joel Pineiro Sea |
| 16 | 182nd | OF Tim Salmon Ana |
| 17 | 203rd | SP Mike Hampton Col |
| 18 | 206th | SP Randy Wolf Phi |
| 19 | 227th | C Ben Davis Sea |
| 20 | 230th | 2B Fernando Vina StL |
| 21 | 251st | 1B Travis Lee Phi |
| 22 | 254th | SS David Eckstein Ana |
| 23 | 275th | OF Reggie Sanders SF |
| 24 | 278th | 3B Eric Hinske Tor |
| 25 | 299th | SP John Burkett Bos |
| 26 | 302nd | SP Bud Smith StL |
| 27 | 323rd | DH Nick Johnson NYA |
| 28 | 326th | OF Frank Catalanotto Tex |
| 29 | 347th | RP Mike DeJean Mil |