| Round | Overall | Player |
|---|---|---|
| 1 | 9th | 1B Jason Giambi NYA |
| 2 | 16th | 3B Troy Glaus Ana |
| 3 | 33rd | SP Matt Morris StL |
| 4 | 40th | OF Gary Sheffield Atl |
| 5 | 57th | RP Kazuhiro Sasaki Sea |
| 6 | 64th | RP Billy Wagner Hou |
| 7 | 81st | 1B Richie Sexson Mil |
| 8 | 88th | SP Jon Lieber ChN |
| 9 | 105th | RP Ugueth Urbina Bos |
| 10 | 112th | SS Juan Uribe Col |
| 11 | 129th | OF Pat Burrell Phi |
| 12 | 136th | SP C.C. Sabathia Cle |
| 13 | 153rd | OF Daryle Ward Hou |
| 14 | 160th | C Jason Varitek Bos |
| 15 | 177th | SP A.J. Burnett Fla |
| 16 | 184th | 2B Marcus Giles Atl |
| 17 | 201st | C Ben Petrick Col |
| 18 | 208th | SS Alex Gonzalez ChN |
| 19 | 225th | 3B Morgan Ensberg Hou |
| 20 | 232nd | SP Livan Hernandez SF |
| 21 | 249th | OF Russ Branyan Cle |
| 22 | 256th | 2B Marlon Anderson Phi |
| 23 | 273rd | OF Gabe Kapler Tex |
| 24 | 280th | 1B Eric Karros LA |
| 25 | 297th | SP Matt Clement ChN |
| 26 | 304th | 1B Erubiel Durazo Ari |
| 27 | 321st | SP Jon Garland ChA |
| 28 | 328th | OF Jeff Conine Bal |
| 29 | 345th | SP Sterling Hitchcock NYA |