| Round | Overall | Player |
|---|---|---|
| 1 | 12th | SP Curt Schilling Ari |
| 2 | 13th | 1B Jeff Bagwell Hou |
| 3 | 36th | OF Brian S. Giles Pit |
| 4 | 37th | SS Rich Aurilia SF |
| 5 | 60th | SP Darryl Kile StL |
| 6 | 61st | 2B Jose Vidro Mon |
| 7 | 84th | SP Wade Miller Hou |
| 8 | 85th | 3B Jeff Cirillo Sea |
| 9 | 108th | OF Jermaine Dye Oak |
| 10 | 109th | SP Kevin Millwood Atl |
| 11 | 132nd | RP Roberto Hernandez KC |
| 12 | 133rd | C Mike Lieberthal Phi |
| 13 | 156th | SP Shawn Estes NYN |
| 14 | 157th | OF Brian Jordan LA |
| 15 | 180th | 3B Tony Batista Bal |
| 16 | 181st | SP Steve Trachsel NYN |
| 17 | 204th | SP Andy Ashby LA |
| 18 | 205th | C Todd Hundley ChN |
| 19 | 228th | SP Kris Benson Pit |
| 20 | 229th | 3B Fernando Tatis Mon |
| 21 | 252nd | 1B David Segui Bal |
| 22 | 253rd | OF Rondell White NYA |
| 23 | 276th | 2B Jerry Hairston Jr. Bal |
| 24 | 277th | SP Garrett Stephenson StL |
| 25 | 300th | OF Chuck Knoblauch KC |
| 26 | 301st | SP Ron Villone Pit |
| 27 | 324th | SS Neifi Perez KC |
| 28 | 325th | SP Andy Benes StL |
| 29 | 348th | SP Todd Stottlemyre Ari |