| Round | Overall | Player |
|---|---|---|
| 1 | 7th | OF Barry Bonds SF |
| 2 | 18th | OF Chipper Jones Atl |
| 3 | 31st | 1B Phil Nevin SD |
| 4 | 42nd | OF Brian S. Giles Pit |
| 5 | 55th | SP Roy Oswalt Hou |
| 6 | 66th | SP Javier Vazquez Mon |
| 7 | 79th | 3B Corey Koskie Min |
| 8 | 90th | 2B Jeff Kent SF |
| 9 | 103rd | OF Pat Burrell Phi |
| 10 | 114th | SP Josh Beckett Fla |
| 11 | 127th | SP Brad Penny Fla |
| 12 | 138th | SP Jeff Weaver Det |
| 13 | 151st | C Toby Hall TB |
| 14 | 162nd | SS Rafael Furcal Atl |
| 15 | 175th | SP Tony Armas Jr. Mon |
| 16 | 186th | SP Hideo Nomo LA |
| 17 | 199th | OF Daryle Ward Hou |
| 18 | 210th | 3B Tony Batista Bal |
| 19 | 223rd | SP Jason Marquis Atl |
| 20 | 234th | 2B Mike Young Tex |
| 21 | 247th | 1B Eric Karros LA |
| 22 | 258th | OF Greg Vaughn TB |
| 23 | 271st | SP Kris Benson Pit |
| 24 | 282nd | SP Jason Bere ChN |
| 25 | 295th | SP Glendon Rusch Mil |
| 26 | 306th | SP Luke Prokopec Tor |
| 27 | 319th | C Michael Barrett Mon |
| 28 | 330th | 2B Ricky Gutierrez Cle |
| 29 | 343rd | SS Alex Gonzalez Fla |