| Round | Overall | Player |
|---|---|---|
| 1 | 10th | OF Manny Ramirez Bos |
| 2 | 15th | C Ivan Rodriguez Tex |
| 3 | 34th | OF Bobby Abreu Phi |
| 4 | 39th | SP Barry Zito Oak |
| 5 | 58th | 1B Richie Sexson Mil |
| 6 | 63rd | SP Kerry Wood ChN |
| 7 | 82nd | RP Jose Mesa Phi |
| 8 | 87th | SP Mark Buehrle ChA |
| 9 | 106th | 2B Craig Biggio Hou |
| 10 | 111th | RP Matt Anderson Det |
| 11 | 130th | SS Juan Uribe Col |
| 12 | 135th | 3B Aaron Boone Cin |
| 13 | 154th | SP Randy Wolf Phi |
| 14 | 159th | OF Shannon Stewart Tor |
| 15 | 178th | 1B Tino Martinez StL |
| 16 | 183rd | SP Kazuhisa Ishii LA |
| 17 | 202nd | SP Juan Cruz ChN |
| 18 | 207th | 3B Mike Lowell Fla |
| 19 | 226th | SS Jose Hernandez Mil |
| 20 | 231st | SP Kelvim Escobar Tor |
| 21 | 250th | SP Carlos Hernandez Hou |
| 22 | 255th | OF Torii Hunter Min |
| 23 | 274th | SP Carl Pavano Mon |
| 24 | 279th | C A.J. Pierzynski Min |
| 25 | 298th | OF David Justice Oak |
| 26 | 303rd | 2B Carlos Febles KC |
| 27 | 322nd | SP Odalis Perez LA |
| 28 | 327th | OF Bubba Trammell SD |
| 29 | 346th | 3B Dean Palmer Det |