| Round | Overall | Player |
|---|---|---|
| 1 | 2nd | OF Sammy Sosa ChN |
| 2 | 23rd | OF Shawn Green LA |
| 3 | 26th | SP Mike Mussina NYA |
| 4 | 47th | SS Rich Aurilia SF |
| 5 | 50th | 1B Mike Sweeney KC |
| 6 | 71st | 3B Aramis Ramirez Pit |
| 7 | 74th | SP Jon Lieber ChN |
| 8 | 95th | C Paul Lo Duca LA |
| 9 | 98th | RP Bob Wickman Cle |
| 10 | 119th | OF Tim Salmon Ana |
| 11 | 122nd | SP Andy Pettitte NYA |
| 12 | 143rd | OF Raul Mondesi Tor |
| 13 | 146th | SP Aaron Sele Ana |
| 14 | 167th | SP Roy Halladay Tor |
| 15 | 170th | SP Derek Lowe Bos |
| 16 | 191st | 1B Fred McGriff ChN |
| 17 | 194th | 2B Marcus Giles Atl |
| 18 | 215th | DH David Ortiz Min |
| 19 | 218th | SP Danys Baez Cle |
| 20 | 239th | SP Terry Adams Phi |
| 21 | 242nd | 2B Marlon Anderson Phi |
| 22 | 263rd | 3B Fernando Tatis Mon |
| 23 | 266th | SP Matt Clement ChN |
| 24 | 287th | SS Felipe Lopez Tor |
| 25 | 290th | C Gary Bennett Col |
| 26 | 311th | OF Robert Fick Det |
| 27 | 314th | OF Placido Polanco StL |
| 28 | 335th | SP Eric Gagne LA |
| 29 | 338th | RP Paul Quantrill LA |