| Round | Overall | Player |
|---|---|---|
| 1 | 5th | SP Randy Johnson Ari |
| 2 | 20th | SS Nomar Garciaparra Bos |
| 3 | 29th | 1B Rafael Palmeiro Tex |
| 4 | 44th | OF Ken Griffey Jr Cin |
| 5 | 53rd | 3B Scott Rolen Phi |
| 6 | 68th | C Jorge Posada NYA |
| 7 | 77th | 2B Alfonso Soriano NYA |
| 8 | 92nd | OF Adam Dunn Cin |
| 9 | 101st | OF Bernie Williams NYA |
| 10 | 116th | RP Danny Graves Cin |
| 11 | 125th | SP Eric Milton Min |
| 12 | 140th | SP Ben Sheets Mil |
| 13 | 149th | SP Ryan Dempster Fla |
| 14 | 164th | SP Woody Williams StL |
| 15 | 173rd | SP Shane Reynolds Hou |
| 16 | 188th | RP Mike Williams Pit |
| 17 | 197th | 2B Todd Walker Cin |
| 18 | 212th | SS Barry Larkin Cin |
| 19 | 221st | 3B Robin Ventura NYA |
| 20 | 236th | SP Steve Sparks Det |
| 21 | 245th | C Todd Hundley ChN |
| 22 | 260th | OF Kevin Millar Fla |
| 23 | 269th | RP Braden Looper Fla |
| 24 | 284th | 1B David Segui Bal |
| 25 | 293rd | OF Russ Branyan Cle |
| 26 | 308th | SP Scott Erickson Bal |
| 27 | 317th | SP Scott Schoeneweis Ana |
| 28 | 332nd | RP Willis Roberts Bal |
| 29 | 341st | OF Rusty Greer Tex |