| Round | Overall | Player |
|---|---|---|
| 1 | 6th | C Mike Piazza NYN |
| 2 | 19th | SP Curt Schilling Ari |
| 3 | 30th | OF Gary Sheffield Atl |
| 4 | 43rd | RP Robb Nen SF |
| 5 | 54th | SP Roger Clemens NYA |
| 6 | 67th | SS Jimmy Rollins Phi |
| 7 | 78th | 1B Frank Thomas ChA |
| 8 | 91st | 3B Todd Zeile Col |
| 9 | 102nd | SP Russ Ortiz SF |
| 10 | 115th | 2B Jose Ortiz Col |
| 11 | 126th | RP Byung-Hyun Kim Ari |
| 12 | 139th | OF Jose Cruz Jr Tor |
| 13 | 150th | OF Reggie Sanders SF |
| 14 | 163rd | DH Ellis Burks Cle |
| 15 | 174th | SP Joel Pineiro Sea |
| 16 | 187th | OF Bob Higginson Det |
| 17 | 198th | 1B Tony Clark Bos |
| 18 | 211th | OF Kenny Lofton ChA |
| 19 | 222nd | 2B Fernando Vina StL |
| 20 | 235th | 3B Morgan Ensberg Hou |
| 21 | 246th | SP Paul Abbott Sea |
| 22 | 259th | SS David Eckstein Ana |
| 23 | 270th | SP Brian Anderson Ari |
| 24 | 283rd | OF Jeff Conine Bal |
| 25 | 294th | C Benito Santiago SF |
| 26 | 307th | SP Kevin Jarvis SD |
| 27 | 318th | OF Tsuyoshi Shinjo SF |
| 28 | 331st | RP Matt Herges Mon |
| 29 | 342nd | SS Cesar Izturis LA |