| Round | Overall | Player |
|---|---|---|
| 1 | 9th | SP Pedro Martinez Bos |
| 2 | 16th | OF Larry Walker Col |
| 3 | 33rd | SP Freddy Garcia Sea |
| 4 | 40th | 1B Jim Thome Cle |
| 5 | 57th | OF Andruw Jones Atl |
| 6 | 64th | 3B Edgardo Alfonzo NYN |
| 7 | 81st | OF Jim Edmonds StL |
| 8 | 88th | RP Jeff Zimmerman Tex |
| 9 | 105th | 2B Jose Vidro Mon |
| 10 | 112th | SP Jamie Moyer Sea |
| 11 | 129th | SS Edgar Renteria StL |
| 12 | 136th | C Javy Lopez Atl |
| 13 | 153rd | SP Kevin Appier Ana |
| 14 | 160th | OF Roger Cedeno NYN |
| 15 | 177th | SS Omar Vizquel Cle |
| 16 | 184th | 1B John Olerud Sea |
| 17 | 201st | DH Brian Daubach Bos |
| 18 | 208th | RP Esteban Yan TB |
| 19 | 225th | 2B Pokey Reese Pit |
| 20 | 232nd | SP Shawn Estes NYN |
| 21 | 249th | RP Jeff Nelson Sea |
| 22 | 256th | 3B Travis Fryman Cle |
| 23 | 273rd | OF Steve Finley Ari |
| 24 | 280th | C Sandy Alomar Jr. ChA |
| 25 | 297th | RP Arthur Rhodes Sea |
| 26 | 304th | OF Alex Ochoa Mil |
| 27 | 321st | SP Jeff Fassero ChN |
| 28 | 328th | 1B B.J. Surhoff Atl |
| 29 | 345th | RP Dave Weathers NYN |