| Round | Overall | Player |
|---|---|---|
| 1 | 1st | SS Alex Rodriguez Tex |
| 2 | 24th | 3B Albert Pujols StL |
| 3 | 25th | OF Ken Griffey Jr Cin |
| 4 | 48th | SP Freddy Garcia Sea |
| 5 | 49th | RP Armando Benitez NYN |
| 6 | 72nd | SP Roger Clemens NYA |
| 7 | 73rd | 2B Alfonso Soriano NYA |
| 8 | 96th | SP Al Leiter NYN |
| 9 | 97th | OF Moises Alou ChN |
| 10 | 120th | SP Andy Pettitte NYA |
| 11 | 121st | C Javy Lopez Atl |
| 12 | 144th | 1B Carlos Pena Oak |
| 13 | 145th | OF Carl Everett Tex |
| 14 | 168th | RP John Rocker Tex |
| 15 | 169th | RP Jeff Zimmerman Tex |
| 16 | 192nd | SP Andy Ashby LA |
| 17 | 193rd | 3B Vinny Castilla Atl |
| 18 | 216th | OF Brian Jordan LA |
| 19 | 217th | 1B Eric Karros LA |
| 20 | 240th | SP Dustin Hermanson Bos |
| 21 | 241st | 1B David Segui Bal |
| 22 | 264th | SS Alex Gonzalez ChN |
| 23 | 265th | C Damian Miller Ari |
| 24 | 288th | OF Kenny Lofton ChA |
| 25 | 289th | OF Jeremy Giambi Oak |
| 26 | 312th | 2B Frank Menechino Oak |
| 27 | 313th | OF Rusty Greer Tex |
| 28 | 336th | SP Ismael Valdez Tex |
| 29 | 337th | SP Andy Benes StL |