| Round | Overall | Player |
|---|---|---|
| 1 | 8th | 1B Jason Giambi NYA |
| 2 | 17th | OF Luis Gonzalez Ari |
| 3 | 32nd | SP Curt Schilling Ari |
| 4 | 41st | 1B Rafael Palmeiro Tex |
| 5 | 56th | OF Adam Dunn Cin |
| 6 | 65th | SP Roy Oswalt Hou |
| 7 | 80th | 3B Edgardo Alfonzo NYN |
| 8 | 89th | OF Cliff Floyd Fla |
| 9 | 104th | OF Pat Burrell Phi |
| 10 | 113th | 3B Hank Blalock Tex |
| 11 | 128th | SP Ben Sheets Mil |
| 12 | 137th | SP Brad Penny Fla |
| 13 | 152nd | 1B Tony Clark Bos |
| 14 | 161st | 3B Jose Valentin ChA |
| 15 | 176th | OF Daryle Ward Hou |
| 16 | 185th | C Ramon Hernandez Oak |
| 17 | 200th | C Charles Johnson Fla |
| 18 | 209th | OF Frank Catalanotto Tex |
| 19 | 224th | SP Livan Hernandez SF |
| 20 | 233rd | SP Mark Prior ChN |
| 21 | 248th | 2B Luis Castillo Fla |
| 22 | 257th | SP Juan Cruz ChN |
| 23 | 272nd | 3B Shane Halter Det |
| 24 | 281st | SP Garrett Stephenson StL |
| 25 | 296th | SP Brian Tollberg SD |
| 26 | 305th | SS Jose Hernandez Mil |
| 27 | 320th | SP Josh Towers Bal |
| 28 | 329th | SS Ramon Vazquez SD |
| 29 | 344th | 1B Kevin Young Pit |