| Round | Overall | Player |
|---|---|---|
| 1 | 3rd | OF Sammy Sosa ChN |
| 2 | 22nd | OF Shawn Green LA |
| 3 | 27th | OF Bobby Abreu Phi |
| 4 | 46th | 1B Frank Thomas ChA |
| 5 | 51st | RP Troy Percival Ana |
| 6 | 70th | RP John Smoltz Atl |
| 7 | 75th | 3B Corey Koskie Min |
| 8 | 94th | SS Cristian Guzman Min |
| 9 | 99th | RP Ugueth Urbina Bos |
| 10 | 118th | SP Joe Mays Min |
| 11 | 123rd | OF Darin Erstad Ana |
| 12 | 142nd | SP A.J. Burnett Fla |
| 13 | 147th | SP Jamie Moyer Sea |
| 14 | 166th | C Jason Varitek Bos |
| 15 | 171st | SP Jarrod Washburn Ana |
| 16 | 190th | SP Brandon Duckworth Phi |
| 17 | 195th | 2B Eric Young Mil |
| 18 | 214th | OF Reggie Sanders SF |
| 19 | 219th | 1B Dmitri Young Det |
| 20 | 238th | SP Kevin Appier Ana |
| 21 | 243rd | OF Juan Pierre Col |
| 22 | 262nd | SP Scott Erickson Bal |
| 23 | 267th | 2B Ricky Gutierrez Cle |
| 24 | 286th | SP Sidney Ponson Bal |
| 25 | 291st | SP Jeff D'Amico NYN |
| 26 | 310th | 3B Joe Randa KC |
| 27 | 315th | SS Cesar Izturis LA |
| 28 | 334th | RP Braden Looper Fla |
| 29 | 339th | C Benito Santiago SF |