| Round | Overall | Player |
|---|---|---|
| 1 | 9th | 1B Jeff Bagwell Hou |
| 2 | 16th | OF Lance Berkman Hou |
| 3 | 33rd | SP Matt Morris StL |
| 4 | 40th | OF Gary Sheffield Atl |
| 5 | 57th | RP Trevor Hoffman SD |
| 6 | 64th | RP Billy Wagner Hou |
| 7 | 81st | SP Russ Ortiz SF |
| 8 | 88th | 2B Jose Vidro Mon |
| 9 | 105th | SS Rafael Furcal Atl |
| 10 | 112th | C Toby Hall TB |
| 11 | 129th | OF Richard Hidalgo Hou |
| 12 | 136th | 3B Morgan Ensberg Hou |
| 13 | 153rd | SP David Wells NYA |
| 14 | 160th | SP Pedro Astacio NYN |
| 15 | 177th | SP Jason Marquis Atl |
| 16 | 184th | DH Ellis Burks Cle |
| 17 | 201st | SP Steve Sparks Det |
| 18 | 208th | SP Danys Baez Cle |
| 19 | 225th | SP Jason Schmidt SF |
| 20 | 232nd | DH David Ortiz Min |
| 21 | 249th | OF Kevin Millar Fla |
| 22 | 256th | SP Carl Pavano Mon |
| 23 | 273rd | RP Vicente Padilla Phi |
| 24 | 280th | 1B Erubiel Durazo Ari |
| 25 | 297th | RP Eddie Guardado Min |
| 26 | 304th | C Mike Rivera Det |
| 27 | 321st | 2B Damion Easley Det |
| 28 | 328th | SS Mike Bordick Bal |
| 29 | 345th | 3B Tyler Houston Mil |